PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_4700CC358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 114aa    MW: 12689.9 Da    PI: 8.8381
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_4700CC358.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.5e-113986552
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
                           kr++r   NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l
  Traes_5BL_4700CC358.1 39 KRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSAQLTLL 86
                           9****************************************9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-93599IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7723787IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-123991No hitNo description
PfamPF001701.3E-103986IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.5E-123987No hitNo description
CDDcd147031.40E-224087No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MDGVNSPFEG ESALSGGLDY AKKAMPAERI AELALLDPKR AKRILANRQS AARSKERKIK  60
YTGELERKVQ TLQTEATTLS AQLTLLQCCI YFIACCCIQS FTLNLKMLSW VICN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3726161e-123AK372616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3007C09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578876.11e-52PREDICTED: transcription factor VIP1-like
SwissprotQ9MA754e-33VIP1_ARATH; Transcription factor VIP1
TrEMBLW5FAP31e-79W5FAP3_WHEAT; Uncharacterized protein
STRINGBRADI4G41890.14e-52(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.16e-23VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]